Multi-omics data in regional healthcare management: A methodological project and economic assessment
https://doi.org/10.35854/1998-1627-2025-12-1535-1546
Abstract
Aim. The work aimed to present a methodological project for the implementation of multi-omics technologies in regional healthcare management practices, from setting management objectives and data preparation to assessing economic efficiency.
Objectives. The work seeks to characterize the input data, i.e., the process of their processing and integration; to formulate rules for quality control and the sustainability of results; to demonstrate an economic model with an incremental cost-effectiveness ratio (ICER) calculation and uncertainty analysis; to discuss the specifics of transferring the solution to Russian conditions.
Methods. The authors used principles of integrating heterogeneous data (early, late, and mixed integration), factor and network methods for combining omics layers, and standard procedures for economic evaluation of medical technologies with single-factor and probabilistic sensitivity analysis.
Results. A template for setting management objectives linked to data sources at the level of a constituent entity of the Russian Federation was developed, and its applicability for various scenarios (oncology, cardiovascular, and rare diseases) was demonstrated. The end-to-end process was examined, from the certification of data sets and the integration of administrative, clinical, and omics layers to the construction of clinical benefit indicators (proportion of early stages, mortality, rehospitalizations) and economic evaluation. The work presents a model for calculating the ICER with single-factor and probabilistic sensitivity analysis, as well as a cost-effectiveness acceptability curve. A diagnostic maturity scale (0–5) has been introduced to assess the readiness of solutions for implementation in practice.
Conclusions. The transition to management decisions based on multi-omics data is possible with the availability of standardized and certified kits, transparent processing regulations, and a quality control system. Economic feasibility is confirmed by ICER calculations, taking into account parameter uncertainty, test costs, and regional specifics. Effective implementation requires a gradual transition from pilot projects to routine practice, as well as consideration of ethical and social risks, including the non-discriminatory nature of algorithms. Multi-omics is considered a promising tool for improving healthcare outcomes and rational allocation of resources at the regional level.
About the Authors
K. P. SolovyevaRussian Federation
Kseniya P. Solovyeva - PhD in Biology, senior researcher of the Laboratory for Information Processing and Transmission in Cognitive Systems, Institute for Information Transmission Problems of the Russian Academy of Sciences (Kharkevich Institute).
19 Bolshoy Karetnyy ln., bldg. 1, Moscow 127051
Competing Interests:
None
K. A. Skvorchevsky
Russian Federation
Konstantin A. Skvorchevsky - D.Sc. in Engineering, PhD in Philosophy, Professor of the Educational and Scientific Center for Humanities and Social Sciences, Moscow Institute of Physics and Technology.
9 Institutskiy ln., Dolgoprudny, Moscow Region, 141701
Competing Interests:
None
P. M. Gotovtsev
Russian Federation
Pavel M. Gotovtsev - PhD in Technical Sciences, senior researcher of the Laboratory for Information Processing and Transmission in Cognitive Systems, Institute for Information Transmission Problems of the Russian Academy of Sciences (Kharkevich Institute).
19 Bolshoy Karetnyy ln., bldg. 1, Moscow 127051
Competing Interests:
None
References
1. Turnbull C., Scott R.H., Thomas E., et al. The 100,000 Genomes Project: Bringing whole genome sequencing to the NHS. The BMJ. 2018;361:k1687. https://doi.org/10.1136/bmj.k1687
2. Popov E.V. Evolution of digital technologies in territorial management. Ekonomika i upravlenie = Economics and Management. 2025;31(3):267-281. (In Russ.). https://doi.org/10.35854/1998-1627-2025-3-267-281
3. Repin D.A. Artificial intelligence technologies as a factor in improving public administration: Challenges and threats. Ekonomika i upravlenie = Economics and Management. 2025;31(2):139-148. (In Russ.). https://doi.org/10.35854/1998-1627-2025-2-139-148
4. Hasin Y., Seldin M., Lusis A. Multi-omics approaches to disease. Genome Biology. 2017;18(1):83. https://doi.org/10.1186/s13059-017-1215-1
5. Karczewski K.J., Snyder M.P. Integrative omics for health and disease. Nature Reviews Genetics. 2018;19(5):299-310. https://doi.org/10.1038/nrg.2018.4
6. Obermeyer Z., Powers B., Vogeli C., Mullainathan S. Dissecting racial bias in an algorithm used to manage the health of populations. Science. 2019;366(6464):447-453. https://doi.org/10.1126/science.aax2342
7. Wang B., Mezlini A., Demir F., et al. Similarity network fusion for aggregating data types on a genomic scale. Nature Methods. 2014;11(3):333-337. https://doi.org/10.1038/nmeth.2810
8. Argelaguet R., Arnol D., Bredikhin D., et al. MOFA+: A statistical framework for comprehensive integration of multi-modal single-cell data. Genome Biology. 2020;21(1):111. https://doi.org/10.1186/s13059-020-02015-1
9. Argelaguet R., Veltenet B., Arnol D., et al. Multi-omics factor analysis — a framework for unsupervised integration of multi-omics data sets. Molecular Systems Biology. 2018;14(6):e8124. https://doi.org/10.15252/msb.20178124
10. Gayoso A., Steier Z., Lopez R., et al. A joint model of RNA expression and surface protein abundance in single cells. Nature Methods. 2020;18:272-282. https://doi.org/10.1101/791947
11. Hao Y., Hao S., Andersen-Nissen E., et al. Integrated analysis of multimodal single-cell data. Cell. 2021;184(13):3573-3587. https://doi.org/10.1016/j.cell.2021.04.048
12. Drummond M., Sculpher M., Claxton K., et al. Methods for the economic evaluation of health care programmes. 4th ed. Oxford: Oxford University Press; 2015. 464 p.
13. Fenwick E., O’Brien B.J., Briggs A. Cost-effectiveness acceptability curves – facts, fallacies and frequently asked questions. Health Economy. 2004;13(5):405-415. https://doi.org/10.1002/hec.903
14. Schwarze K., Buchanan J., Fermont J.M., et al. The complete costs of genome sequencing: A microcosting study in cancer and rare diseases from a single center in the United Kingdom. Genetics in Medicine. 2020:22(1):85-94. https://doi.org/10.1038/s41436-019-0618-7
15. Gokhshtand E.V. International experience in forecasting socio-economic development: Possibilities of application in Russian practical activities. Ekonomika i upravlenie = Economics and Management. 2025;31(7):923-933. (In Russ.). https://doi.org/10.35854/1998-1627-2025-7-923-933
16. Solovyeva K., Belyaev V., Zvorykina E., et al. The impact of exercise, diet, and meditation on cognitive function, prefrontal hemodynamics, functional connectivity, and biochemical parameters. NeuroRegulation. 2024;11(4):355-378. https://doi.org/10.15540/nr.11.4.355
17. Solovyeva K., Skvorchevsky K. Neuroscience in the cultural landscape of late capitalism. Filosofiya. Zhurnal Vysshei shkoly ekonomiki = Philosophy Journal of the Higher School of Economics. 2025;9(1): 143-157. (In Russ.). https://doi.org/10.17323/2587-8719-2025-1-143-157
18. Repin D.A., Ignatyev S.A. “Implementation impossible to refuse”: The influence of ethics on using artificial intelligence in socio-economic management. Ekonomika i upravlenie = Economics and Management. 2024;30(12):1503-1509. (In Russ.). https://doi.org/10.35854/1998-1627-2024-12-1503-1509
19. Koening Z., Yohannes M.T., Nkambule L.L., et al. A harmonized public resource of deeply sequenced diverse human genomes. Genome Research. 2024;34(5):796-809. https://doi.org/10.1101/gr.278378.123
20. Ignatev S.A., Klevtsova O.Yu., Plotnikov V.A. Improving public administration based on data mining technologies. Izvestiya Sankt-Peterburgskogo gosudarstvennogo ekonomicheskogo universiteta. 2025;(2):50-58. (In Russ.).
Review
For citations:
Solovyeva K.P., Skvorchevsky K.A., Gotovtsev P.M. Multi-omics data in regional healthcare management: A methodological project and economic assessment. Economics and Management. 2025;31(12):1535-1546. (In Russ.) https://doi.org/10.35854/1998-1627-2025-12-1535-1546
JATS XML


















